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Showing :
gene symbol
•
reset
1
vote
4
replies
2.7k
views
DESeq2 swap ensembl gene id rownames with gene symbol column
deseq2
dataframe
ensembl gene id
gene symbol
entrezid
4.5 years ago
jason.williams
▴ 10
0
votes
3
replies
2.0k
views
DESeq2: removal of duplicated genes during statistical analysis
deseq2
gene symbol
ensembl
updated 5.6 years ago by
Michael Love
42k • written 5.6 years ago by
thkapell
▴ 10
1
vote
2
replies
962
views
Obtain GRanges object by gene names
GRanges
gene symbol
IdeoViz
5.6 years ago
Arman Shahrisa
▴ 20
0
votes
3
replies
1.7k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate
gene symbol
coordinate
5.9 years ago
574233829
• 0
0
votes
3
replies
1.5k
views
Choosing most accurate gene symbol from multiple gene symbols
transcript_id
gene symbol
updated 8.8 years ago by
James W. MacDonald
66k • written 8.8 years ago by
Jo
▴ 30
2
votes
4
replies
13k
views
biomartRt: convert mouse gene symbol return multiple human gene symbol
biomart
gene symbol
updated 8.9 years ago by
Diego Diez
▴ 760 • written 9.1 years ago by
chang02_23
▴ 30
0
votes
2
replies
3.5k
views
Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview
KEGG
annotation
gene symbol
visualization
updated 9.0 years ago by
Luo Weijun
★ 1.6k • written 9.0 years ago by
alakatos
▴ 130
3
votes
3
replies
3.0k
views
Different answer from Homo.sapiens and biomaRt packages!!
biomart
homo.sapiens
genome regions
gene symbol
updated 9.1 years ago by
Hervé Pagès
16k • written 9.1 years ago by
NS
▴ 60
27
votes
21
replies
23k
views
Mapping genome regions to gene symbols
tcga cnv
gene symbol
coordinate
updated 19 months ago by
James W. MacDonald
66k • written 9.1 years ago by
NS
▴ 60
0
votes
3
replies
2.7k
views
filtering out probes with no gene symbol from expressionSet
probe
filter
subset
gene symbol
affy
9.3 years ago
alakatos
▴ 130
10 results • Page
1 of 1
Recent ...
Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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Stephanie M. Gogarten
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▴ 10
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